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2092 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					SRA Run Selector		Prior to Oct 01, 2012
GSE35698	BRCA1 functions independently of homologous recombination in DNA interstrand crosslink repair	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BEDGRAPH SRA Run Selector	Robert Babak Faryabi	Sep 30, 2012
GSE40539	Genome-wide DNA hydroxymethylation changes are associated with neurodevelopmental genes in the developing human brain	Methylation profiling by high throughput sequencing	Homo sapiens	1	TXT SRA Run Selector	Tao Wang	Sep 30, 2012
GSE40651	Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs (CLIP-Seq)	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	5	BED SRA Run Selector	Gene Yeo	Sep 30, 2012
GSE40652	Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs (RNA-Seq)	Expression profiling by high throughput sequencing	Mus musculus	18	BED SRA Run Selector	Gene Yeo	Sep 30, 2012
GSE37403	Genome-wide analysis of the SNAPc complex [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BEDGRAPH SRA Run Selector	Alessandro Gardini	Sep 28, 2012
GSE39328	Differential methylation in discrete developmental stages of the parasitic nematode Trichinella spiralis	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Trichinella spiralis	6	TXT SRA Run Selector	Mingyuan Liu	Sep 28, 2012
GSE40256	Functional analysis of Arabidopsis ARGONAUTE1 using a slicer-defective mutant: Transcript immunoprecipitation	Expression profiling by high throughput sequencing	Arabidopsis thaliana	8	GFF3 SRA Run Selector	James C Carrington	Sep 28, 2012
GSE40258	Functional analysis of Arabidopsis ARGONAUTE1 using a slicer-defective mutant: Small RNA immunoprecipitation	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	3	GFF3 SRA Run Selector	James C Carrington	Sep 28, 2012
GSE40684	Foxp3 exploits a preexistent enhancer landscape for regulatory T cell lineage specification [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11	TXT SRA Run Selector	Aaron Arvey	Sep 28, 2012
GSE26598	hDot1L and RNAPII-5p in NCCIT cells.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED SRA Run Selector	Inkyung Jung	Sep 27, 2012
GSE37229	c-Myc is a universal amplifier of gene expression [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED SRA Run Selector	Gangqing Hu	Sep 27, 2012
GSE29291	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome [single-end MNase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	6	BED TXT SRA Run Selector	Jason D Lieb	Sep 26, 2012
GSE29292	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome [Paired-end Mnase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	BED TXT SRA Run Selector	Jason D Lieb	Sep 26, 2012
GSE29293	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome [RNA_seq]	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	6	WIG SRA Run Selector	Jason D Lieb	Sep 26, 2012
GSE41060	Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax.	Methylation profiling by high throughput sequencing	Oxytricha trifallax	6	TXT SRA Run Selector	John Russell Bracht	Sep 26, 2012
GSE40046	Transcriptome-wide Analysis of Exosome Targets in the Budding Yeast Saccharomyces cerevisiae	Other	Saccharomyces cerevisiae	16	WIG SRA Run Selector	Grzegorz Kudla	Sep 25, 2012
GSE41105	cMyc and Max ChIP-seq analysis in small cell lung carcinoma cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	WIG SRA Run Selector	Richard A Young	Sep 25, 2012
GSE41111	Transcriptional state during endodermal differentiation	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	WIG SRA Run Selector	Richard A Young	Sep 25, 2012
GSE24007	Genome-wide expression analysis of dikaryotic colonies of Schizophyllum commune under various conditions: wild-type, delta-wc2, delta-wc2 hsp3(pr)-wc2	Expression profiling by high throughput sequencing	Schizophyllum commune	5	BEDGRAPH SRA Run Selector	H.A.B. Wösten	Sep 24, 2012
GSE41048	Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues (ChIP-Seq and MeDIP-Seq)	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	21	BW SRA Run Selector	Gilad Landan	Sep 24, 2012